Publications & Presentations

ChIP-Atlas

• Zou Z, Ohta T, Miura F, Oki S. ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data. Nucleic Acids Research. Oxford University Press (OUP); 2022. https://doi.org/10.1093/nar/gkac199

• Oki S, Ohta T, Shioi G, Hatanaka H, Ogasawara O, Okuda Y, Kawaji H, Nakaki R, Sese J, Meno C. ChIP‐Atlas: a data‐mining suite powered by full integration of public ChIP‐seq data. Vol. 19, EMBO reports. EMBO; 2018. https://doi.org/10.15252/embr.201846255

Fanta.bio (related publications)

FANTOM5 main paper

• https://pubmed.ncbi.nlm.nih.gov/24670764/
• https://pubmed.ncbi.nlm.nih.gov/24670763/

refTSS

• Abugessaisa, I., Noguchi S, Hasegawa A, Kondo A, Kawaji H, Carninci P, Kasukawa T. (2019). “refTSS: A Reference Data Set for Human and Mouse Transcription Start Sites.” J Mol Biol. https://doi.org/10.1016/j.jmb.2019.04.045.

MoG+

• Takada T, Fukuta K, Usuda D, Kushida T, Kondo S, Kawamoto S, Yoshiki A, Obata Y, Fujiyama A, Toyoda A, Noguchi H, Shiroishi T, Masuya H., MoG+: a database of genomic variations across three mouse subspecies for biomedical research., Mammalian Genome. https://doi.org/10.1007/s00335-021-09933-w (2021)

Presentations

Biohackathon 2022#9 (2022.9.4)

• https://togotv.dbcls.jp/20220904.html

Togo Symposium 2022

• Slide: https://biosciencedbc.jp/event/symposium/togo2022/files/talk_kasukawa.pdf
• Movie: https://togotv.dbcls.jp/20221102.html